diff --git a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/GeofenceDAO.java b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/GeofenceDAO.java
index 8c309673676..4a7fc925a39 100644
--- a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/GeofenceDAO.java
+++ b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/GeofenceDAO.java
@@ -116,7 +116,7 @@ public interface GeofenceDAO {
      * @param groupIdsToDelete group ids to be removed from the mapping table
      * @throws DeviceManagementDAOException error occurred while deleting group id mapping records
      */
-    void deleteGeofenceGroupMapping(List<Integer> groupIdsToDelete) throws DeviceManagementDAOException;
+    void deleteGeofenceGroupMapping(List<Integer> groupIdsToDelete, int fenceId) throws DeviceManagementDAOException;
 
     /**
      * Create geofence-event mapping records
diff --git a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/impl/GeofenceDAOImpl.java b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/impl/GeofenceDAOImpl.java
index bd557dfd7f3..50264346958 100644
--- a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/impl/GeofenceDAOImpl.java
+++ b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/dao/impl/GeofenceDAOImpl.java
@@ -356,13 +356,14 @@ public class GeofenceDAOImpl implements GeofenceDAO {
     }
 
     @Override
-    public void deleteGeofenceGroupMapping(List<Integer> groupIdsToDelete) throws DeviceManagementDAOException {
+    public void deleteGeofenceGroupMapping(List<Integer> groupIdsToDelete, int fenceId) throws DeviceManagementDAOException {
         try {
             Connection conn = this.getConnection();
-            String sql = "DELETE FROM DM_GEOFENCE_GROUP_MAPPING WHERE GROUP_ID = ?";
+            String sql = "DELETE FROM DM_GEOFENCE_GROUP_MAPPING WHERE GROUP_ID = ? AND FENCE_ID = ?";
             try (PreparedStatement stmt = conn.prepareStatement(sql)) {
                 for (Integer groupId : groupIdsToDelete) {
                     stmt.setInt(1, groupId);
+                    stmt.setInt(2, fenceId);
                     stmt.addBatch();
                 }
                 stmt.executeBatch();
diff --git a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/geo/service/GeoLocationProviderServiceImpl.java b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/geo/service/GeoLocationProviderServiceImpl.java
index 09f8bf0d598..9c77c755884 100644
--- a/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/geo/service/GeoLocationProviderServiceImpl.java
+++ b/components/device-mgt/org.wso2.carbon.device.mgt.core/src/main/java/org/wso2/carbon/device/mgt/core/geo/service/GeoLocationProviderServiceImpl.java
@@ -1503,7 +1503,7 @@ public class GeoLocationProviderServiceImpl implements GeoLocationProviderServic
             }
             List<Integer> groupIdsOfGeoFence = geofenceDAO.getGroupIdsOfGeoFence(fenceId);
             if (!groupIdsOfGeoFence.isEmpty()) {
-                geofenceDAO.deleteGeofenceGroupMapping(groupIdsOfGeoFence);
+                geofenceDAO.deleteGeofenceGroupMapping(groupIdsOfGeoFence, fenceId);
             }
             geofenceDAO.deleteGeofenceById(fenceId);
             DeviceManagementDAOFactory.commitTransaction();
@@ -1554,7 +1554,7 @@ public class GeoLocationProviderServiceImpl implements GeoLocationProviderServic
                     groupIdsToAdd.add(newGroupId);
                 }
             }
-            geofenceDAO.deleteGeofenceGroupMapping(groupIdsToDelete);
+            geofenceDAO.deleteGeofenceGroupMapping(groupIdsToDelete, fenceId);
             geofenceDAO.createGeofenceGroupMapping(geofenceData, groupIdsToAdd);
             DeviceManagementDAOFactory.commitTransaction();
             if (updatedRowCount > 0) {